fix(repo): trim clone ref once so git clone gets the trimmed value

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toothbrush2mo ago

isEntireCloneURL trimmed for detection but the raw arg was forwarded to git clone; trim up front so both agree.

Co-Authored-By: Claude Opus 4.8 (1M context) noreply@anthropic.com Entire-Checkpoint: dc663a716dad

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Add Entire Repo Clone Command

Claude CodeOpus 4.8[1m]
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