Identify Commands Needing Checkpoints v1.1 Support

Claude Code·Opus 4.8[1m]·computermode·3mo ago·1hr 17min·3 Checkpoints·18 file changes·+770/-206·286.5K tokens

After https://github.com/entireio/cli/pull/1335 ships, what other commands need checkpoints v1.1 support? check out the changes in that PR to answer

3mo ago·5m

I checked out PR #1335 (fix/checkpoints-v1.1-advance-after-sync, fetched as c3ae8f501). Its contract: v1 stays the write/fetch primary; v1.1 (refs/entire/checkpoints/v1.1) is a local-only read mirror advanced only by entire-managed v1 writes/fetches; reads use the configured ref as-is — they no longer self-repair the mirror. The PR converts explain (+export), status flags, resume reads, dispatch-local, attach, rewind, review context, and strategy.ListCheckpoints to checkpoint.NewCommittedReadStore.

Sweeping the PR branch for committed-metadata readers not behind the read store, here's what still needs v1.1 support:

Real gaps

1. entire doctor (and doctor bundle) — the main one. Zero references to the mirror ref anywhere in doctor.go/doctor_bundle.go. Doctor diagnoses v1 local-vs-origin disconnection (doctor.go:339) but nothing detects a missing, stale, or diverged mirror — which is exactly the PR's own stated risk ("wrong mirror timing could make reads miss data until the next v1 sync"). Since the PR explicitly removed read-time self-repair (docs now say "Read paths do not create, repair, or advance the mirror before use"), doctor is the natural — currently nonexistent — repair path. A check + fix is cheap: compare mirror to v1 tip and call strategy.MirrorCommittedMetadataRef. doctor bundle also doesn't capture mirror ref state for debugging.

2. entire resume / session resume — remote-metadata story under v1.1. Deliberately degraded in this PR, and flagged as such in its CLAUDE.md edit ("the deliberate exception"):

  • promoteRemoteTrackingMetadataBranch is skipped entirely when the read ref isn't v1 (resume.go:193)
  • checkRemoteMetadata (resume.go:606) bails with "This ref is local-only. Try: entire explain"

So under v1.1, resuming a checkpoint whose metadata only exists on origin (fresh clone, teammate's checkpoint) doesn't work. This matches the mirror-first phased rollout — a later phase needs the v1.1 fetch story (fetch v1 → mirror → read), and resume is the first command that hits it.

3. entire clean — no way to remove or reset the mirror ref. clean.go, strategy/cleanup.go, and manual_commit_reset.go enumerate shadow branches, session state, and temp files only — refs/entire/* is never discovered or deleted. If the mirror diverges or a user turns v1.1 off, the ref lingers with no CLI escape hatch. (The PR did add mirroring to DeleteOrphanedCheckpoints after it rewrites v1, so that part is covered.)

Minor / housekeeping

  • checkpoint.LookupSessionLog (checkpoint/committed.go:1349) — exported committed-read entry point still bound to v1 via NewGitStore, but it has zero callers on the branch. Dead API; delete or convert before someone uses it.
  • benchutil.go:174 — benchmarks construct a v1-bound store directly; only matters if you want benches to exercise the v1.1 read path.

Looks like a gap but is intentional (don't chase these)

  • attach.go:423–430 checkpointPresentLocally reads local v1 — documented: it checks the ref writes will target.
  • manual_commit_hooks.go:1064/2773 (attribution, transcript finalize) read v1 right after writing v1 — read-after-write on the primary.
  • cleanup.go:172 orphan detection reads v1 — deletion operates on v1, so checking the primary (not a possibly-stale mirror) is correct.
  • manual_commit_logs.go trailers embed entire/checkpoints/v1 — trailers should reference the durable, pushed ref.
  • entire search, activity, trail — no local committed-metadata reads at all (server API / separate trails branch).

Short version: the next PRs are (1) doctor check+repair for the mirror, (2) the v1.1 remote-fetch path so resume works on fresh clones, (3) mirror-ref cleanup in entire clean, plus deleting dead LookupSessionLog.

Let's get started on the doctor check+repair for the mirror

3mo ago·15.4s

Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/5.1.0/skills/brainstorming

Brainstorming Ideas Into Designs

Help turn ideas into fully formed designs and specs through natural collaborative dialogue.

Start by understanding the current project context, then ask questions one at a time to refine the idea. Once you understand what you're building, present the design and get user approval.

<HARD-GATE> Do NOT invoke any implementation skill, write any code, scaffold any project, or take any implementation action until you have presented a design and the user has approved it. This applies to EVERY project regardless of perceived simplicity. </HARD-GATE>

Anti-Pattern: "This Is Too Simple To Need A Design"

Every project goes through this process. A todo list, a single-function utility, a config change — all of them. "Simple" projects are where unexamined assumptions cause the most wasted work. The design can be short (a few sentences for truly simple projects), but you MUST present it and get approval.

Checklist

You MUST create a task for each of these items and complete them in order:

  1. Explore project context — check files, docs, recent commits
  2. Offer visual companion (if topic will involve visual questions) — this is its own message, not combined with a clarifying question. See the Visual Companion section below.
  3. Ask clarifying questions — one at a time, understand purpose/constraints/success criteria
  4. Propose 2-3 approaches — with trade-offs and your recommendation
  5. Present design — in sections scaled to their complexity, get user approval after each section
  6. Write design doc — save to docs/superpowers/specs/YYYY-MM-DD-<topic>-design.md and commit
  7. Spec self-review — quick inline check for placeholders, contradictions, ambiguity, scope (see below)
  8. User reviews written spec — ask user to review the spec file before proceeding
  9. Transition to implementation — invoke writing-plans skill to create implementation plan

Process Flow

The terminal state is invoking writing-plans. Do NOT invoke frontend-design, mcp-builder, or any other implementation skill. The ONLY skill you invoke after brainstorming is writing-plans.

The Process

Understanding the idea:

  • Check out the current project state first (files, docs, recent commits)
  • Before asking detailed questions, assess scope: if the request describes multiple independent subsystems (e.g., "build a platform with chat, file storage, billing, and analytics"), flag this immediately. Don't spend questions refining details of a project that needs to be decomposed first.
  • If the project is too large for a single spec, help the user decompose into sub-projects: what are the independent pieces, how do they relate, what order should they be built? Then brainstorm the first sub-project through the normal design flow. Each sub-project gets its own spec → plan → implementation cycle.
  • For appropriately-scoped projects, ask questions one at a time to refine the idea
  • Prefer multiple choice questions when possible, but open-ended is fine too
  • Only one question per message - if a topic needs more exploration, break it into multiple questions
  • Focus on understanding: purpose, constraints, success criteria

Exploring approaches:

  • Propose 2-3 different approaches with trade-offs
  • Present options conversationally with your recommendation and reasoning
  • Lead with your recommended option and explain why

Presenting the design:

  • Once you believe you understand what you're building, present the design
  • Scale each section to its complexity: a few sentences if straightforward, up to 200-300 words if nuanced
  • Ask after each section whether it looks right so far
  • Cover: architecture, components, data flow, error handling, testing
  • Be ready to go back and clarify if something doesn't make sense

Design for isolation and clarity:

  • Break the system into smaller units that each have one clear purpose, communicate through well-defined interfaces, and can be understood and tested independently
  • For each unit, you should be able to answer: what does it do, how do you use it, and what does it depend on?
  • Can someone understand what a unit does without reading its internals? Can you change the internals without breaking consumers? If not, the boundaries need work.
  • Smaller, well-bounded units are also easier for you to work with - you reason better about code you can hold in context at once, and your edits are more reliable when files are focused. When a file grows large, that's often a signal that it's doing too much.

Working in existing codebases:

  • Explore the current structure before proposing changes. Follow existing patterns.
  • Where existing code has problems that affect the work (e.g., a file that's grown too large, unclear boundaries, tangled responsibilities), include targeted improvements as part of the design - the way a good developer improves code they're working in.
  • Don't propose unrelated refactoring. Stay focused on what serves the current goal.

After the Design

Documentation:

  • Write the validated design (spec) to docs/superpowers/specs/YYYY-MM-DD-<topic>-design.md
    • (User preferences for spec location override this default)
  • Use elements-of-style:writing-clearly-and-concisely skill if available
  • Commit the design document to git

Spec Self-Review: After writing the spec document, look at it with fresh eyes:

  1. Placeholder scan: Any "TBD", "TODO", incomplete sections, or vague requirements? Fix them.
  2. Internal consistency: Do any sections contradict each other? Does the architecture match the feature descriptions?
  3. Scope check: Is this focused enough for a single implementation plan, or does it need decomposition?
  4. Ambiguity check: Could any requirement be interpreted two different ways? If so, pick one and make it explicit.

Fix any issues inline. No need to re-review — just fix and move on.

User Review Gate: After the spec review loop passes, ask the user to review the written spec before proceeding:

"Spec written and committed to <path>. Please review it and let me know if you want to make any changes before we start writing out the implementation plan."

Wait for the user's response. If they request changes, make them and re-run the spec review loop. Only proceed once the user approves.

Implementation:

  • Invoke the writing-plans skill to create a detailed implementation plan
  • Do NOT invoke any other skill. writing-plans is the next step.

Key Principles

  • One question at a time - Don't overwhelm with multiple questions
  • Multiple choice preferred - Easier to answer than open-ended when possible
  • YAGNI ruthlessly - Remove unnecessary features from all designs
  • Explore alternatives - Always propose 2-3 approaches before settling
  • Incremental validation - Present design, get approval before moving on
  • Be flexible - Go back and clarify when something doesn't make sense

Visual Companion

A browser-based companion for showing mockups, diagrams, and visual options during brainstorming. Available as a tool — not a mode. Accepting the companion means it's available for questions that benefit from visual treatment; it does NOT mean every question goes through the browser.

Offering the companion: When you anticipate that upcoming questions will involve visual content (mockups, layouts, diagrams), offer it once for consent:

"Some of what we're working on might be easier to explain if I can show it to you in a web browser. I can put together mockups, diagrams, comparisons, and other visuals as we go. This feature is still new and can be token-intensive. Want to try it? (Requires opening a local URL)"

This offer MUST be its own message. Do not combine it with clarifying questions, context summaries, or any other content. The message should contain ONLY the offer above and nothing else. Wait for the user's response before continuing. If they decline, proceed with text-only brainstorming.

Per-question decision: Even after the user accepts, decide FOR EACH QUESTION whether to use the browser or the terminal. The test: would the user understand this better by seeing it than reading it?

  • Use the browser for content that IS visual — mockups, wireframes, layout comparisons, architecture diagrams, side-by-side visual designs
  • Use the terminal for content that is text — requirements questions, conceptual choices, tradeoff lists, A/B/C/D text options, scope decisions

A question about a UI topic is not automatically a visual question. "What does personality mean in this context?" is a conceptual question — use the terminal. "Which wizard layout works better?" is a visual question — use the browser.

If they agree to the companion, read the detailed guide before proceeding: skills/brainstorming/visual-companion.md

3mo ago·8m

Here are the approaches I see, with my recommendation first:

Approach A — Standalone check following the checkDisconnectedMetadata template (recommended)

  • New diagnosis helper in strategy/v1_custom_ref_mirror.go (next to the repair helpers from #1335): DiagnoseCommittedMetadataMirror(ctx, repo) returning a status — NotConfigured | OK | MirrorMissing | Behind | Diverged | PrimaryMissing — plus the two tips for messaging. The ancestry-classification logic can be resurrected from the syncMirrorForRead code that #1335 deleted, but read-only.
  • New checkCommittedMetadataMirror(cmd, force) in doctor.go, run immediately after checkDisconnectedMetadata (ordering matters: reconcile rewrites v1 and re-mirrors; this check then catches anything residual). Same flow as the existing check: status line → explanation → confirm (skipped with --force) → fix = the existing strategy.MirrorCommittedMetadataRef.
  • Bundle: one new entry using the same diagnosis helper + a git for-each-ref capture.

Trade-off: one more check function and helper, but each concern stays isolated, testable, and consistent with how doctor already works.

Approach B — Fold into the existing metadata check

Extend checkDisconnectedMetadata to also diagnose the mirror, since both are "metadata branch health."

Trade-off: less new surface, but it conflates two different relationships (local-v1 vs origin-v1, and v1 vs mirror) in one function — messaging, prompting, and tests all get tangled. The existing function is already at comfortable size.

Approach C — Silent auto-repair

Doctor just calls MirrorCommittedMetadataRefBestEffort and prints "✓ fixed" — no diagnosis, no prompt.

Trade-off: least code, but inconsistent with doctor's confirm-first pattern, and it hides the diverged-mirror anomaly you said you want surfaced with a confirm.

My recommendation is A. Want me to proceed with that, or do you see it differently?

A

3mo ago·1m

Here's the design, section by section — flag anything that looks off.

1. Diagnosis helper (strategy package)

New code in strategy/v1_custom_ref_mirror.go, next to the repair helpers it complements:

Read-only — never moves a ref. Resolves via checkpoint.ResolveCommittedRefs; classification is hash-equality then IsAncestor (the same logic #1335 deleted from syncMirrorForRead, resurrected as pure diagnosis). Diagnoses against the local v1 ref only — no origin-tracking fallback, since the mirror contract is "mirror follows local v1". Returns an error only on unexpected failures (unreadable refs/commits, ancestry check failure), which doctor reports as a failed check.

2. Repair

No new repair code. The fix for Missing, Behind, and Diverged is the same call: strategy.MirrorCommittedMetadataRef(ctx, repo, refs) — it already seeds, advances, or force-points unconditionally, and returns errors for doctor to surface.

3. Doctor check (cli package)

New checkCommittedMetadataMirror(cmd, force) in doctor.go, called right after checkDisconnectedMetadata (reconcile rewrites v1 and re-mirrors; this check catches residual drift). Error accumulates into finalErr like the existing check. Per status:

StatusOutputAction
NotConfiguredsilent (v1 users see no v1.1 noise, like the Codex check when absent)—
OK✓ Checkpoint read mirror: OK—
PrimaryMissing, no mirror✓ Checkpoint read mirror: OK (no committed metadata yet)—
PrimaryMissing, mirror existsCheckpoint read mirror: v1 BRANCH MISSING + suggest git fetch origin entire/checkpoints/v1:entire/checkpoints/v1warn-only, no fix (restoring v1 is out of scope)
MissingCheckpoint read mirror: MISSING + "v1.1 reads will find no checkpoints"confirm → fix
BehindCheckpoint read mirror: STALE + short hashesconfirm → fix
DivergedCheckpoint read mirror: DIVERGED + explicit "mirror has commits not on v1; fixing discards them (v1 is the source of truth)"confirm → fix

--force auto-fixes Missing/Behind/Diverged without prompting (matches the flag's "Auto-fix all issues" semantics). Confirm uses NewAccessibleForm like the existing checks. Doctor's long help gets a new numbered entry.

4. Bundle capture

One new entry in writeDoctorBundle: entire-refs.txt containing

  • git for-each-ref --format='%(refname) %(objectname)' refs/heads/entire refs/entire refs/remotes/origin/entire output (v1 tip, mirror tip, shadow branches, origin tracking), and
  • a mirror status: STALE (mirror abc1234, v1 def5678) line from the same diagnosis helper.

Best-effort: failures write an error line into the entry instead of failing the bundle (same pattern as addCommandOutput). Goes through the standard redaction path (hashes/refnames are unaffected by redaction).

5. Testing

  • strategy/v1_custom_ref_mirror_test.go: table-driven TestDiagnoseCommittedMetadataMirror covering all six states, reusing the repo/settings helpers already in that file on the #1335 branch. t.Parallel() except where t.Chdir is needed for settings resolution.
  • doctor_test.go: per-state output assertions + verify --force actually moves the mirror ref to v1 tip, and that the diverged path reports what it discards.
  • doctor_bundle_test.go: bundle contains entire-refs.txt with the mirror status line.

Branch plan (already agreed): stacked branch off fix/checkpoints-v1.1-advance-after-sync, separate PR.

Does each section look right, or should I adjust anything before writing the spec?

Looks accurate, create the spec and write the changes

3mo ago·3m

Spec self-review: no placeholders, sections consistent (table matches the six statuses, bundle reuses the same helper), scope is single-plan sized. Committing it:

Base directory for this skill: /Users/ninawork/.claude/plugins/cache/claude-plugins-official/superpowers/5.1.0/skills/test-driven-development

Test-Driven Development (TDD)

Overview

Write the test first. Watch it fail. Write minimal code to pass.

Core principle: If you didn't watch the test fail, you don't know if it tests the right thing.

Violating the letter of the rules is violating the spirit of the rules.

When to Use

Always:

  • New features
  • Bug fixes
  • Refactoring
  • Behavior changes

Exceptions (ask your human partner):

  • Throwaway prototypes
  • Generated code
  • Configuration files

Thinking "skip TDD just this once"? Stop. That's rationalization.

The Iron Law

Write code before the test? Delete it. Start over.

No exceptions:

  • Don't keep it as "reference"
  • Don't "adapt" it while writing tests
  • Don't look at it
  • Delete means delete

Implement fresh from tests. Period.

Red-Green-Refactor

RED - Write Failing Test

Write one minimal test showing what should happen.

<Good> ```typescript test('retries failed operations 3 times', async () => { let attempts = 0; const operation = () => { attempts++; if (attempts < 3) throw new Error('fail'); return 'success'; };

const result = await retryOperation(operation);

expect(result).toBe('success'); expect(attempts).toBe(3); });

Vague name, tests mock not code </Bad>

Requirements:

  • One behavior
  • Clear name
  • Real code (no mocks unless unavoidable)

Verify RED - Watch It Fail

MANDATORY. Never skip.

Confirm:

  • Test fails (not errors)
  • Failure message is expected
  • Fails because feature missing (not typos)

Test passes? You're testing existing behavior. Fix test.

Test errors? Fix error, re-run until it fails correctly.

GREEN - Minimal Code

Write simplest code to pass the test.

<Good> ```typescript async function retryOperation<T>(fn: () => Promise<T>): Promise<T> { for (let i = 0; i < 3; i++) { try { return await fn(); } catch (e) { if (i === 2) throw e; } } throw new Error('unreachable'); } ``` Just enough to pass </Good> <Bad> ```typescript async function retryOperation<T>( fn: () => Promise<T>, options?: { maxRetries?: number; backoff?: 'linear' | 'exponential'; onRetry?: (attempt: number) => void; } ): Promise<T> { // YAGNI } ``` Over-engineered </Bad>

Don't add features, refactor other code, or "improve" beyond the test.

Verify GREEN - Watch It Pass

MANDATORY.

Confirm:

  • Test passes
  • Other tests still pass
  • Output pristine (no errors, warnings)

Test fails? Fix code, not test.

Other tests fail? Fix now.

REFACTOR - Clean Up

After green only:

  • Remove duplication
  • Improve names
  • Extract helpers

Keep tests green. Don't add behavior.

Repeat

Next failing test for next feature.

Good Tests

QualityGoodBad
MinimalOne thing. "and" in name? Split it.test('validates email and domain and whitespace')
ClearName describes behaviortest('test1')
Shows intentDemonstrates desired APIObscures what code should do

Why Order Matters

"I'll write tests after to verify it works"

Tests written after code pass immediately. Passing immediately proves nothing:

  • Might test wrong thing
  • Might test implementation, not behavior
  • Might miss edge cases you forgot
  • You never saw it catch the bug

Test-first forces you to see the test fail, proving it actually tests something.

"I already manually tested all the edge cases"

Manual testing is ad-hoc. You think you tested everything but:

  • No record of what you tested
  • Can't re-run when code changes
  • Easy to forget cases under pressure
  • "It worked when I tried it" ≠ comprehensive

Automated tests are systematic. They run the same way every time.

"Deleting X hours of work is wasteful"

Sunk cost fallacy. The time is already gone. Your choice now:

  • Delete and rewrite with TDD (X more hours, high confidence)
  • Keep it and add tests after (30 min, low confidence, likely bugs)

The "waste" is keeping code you can't trust. Working code without real tests is technical debt.

"TDD is dogmatic, being pragmatic means adapting"

TDD IS pragmatic:

  • Finds bugs before commit (faster than debugging after)
  • Prevents regressions (tests catch breaks immediately)
  • Documents behavior (tests show how to use code)
  • Enables refactoring (change freely, tests catch breaks)

"Pragmatic" shortcuts = debugging in production = slower.

"Tests after achieve the same goals - it's spirit not ritual"

No. Tests-after answer "What does this do?" Tests-first answer "What should this do?"

Tests-after are biased by your implementation. You test what you built, not what's required. You verify remembered edge cases, not discovered ones.

Tests-first force edge case discovery before implementing. Tests-after verify you remembered everything (you didn't).

30 minutes of tests after ≠ TDD. You get coverage, lose proof tests work.

Common Rationalizations

ExcuseReality
"Too simple to test"Simple code breaks. Test takes 30 seconds.
"I'll test after"Tests passing immediately prove nothing.
"Tests after achieve same goals"Tests-after = "what does this do?" Tests-first = "what should this do?"
"Already manually tested"Ad-hoc ≠ systematic. No record, can't re-run.
"Deleting X hours is wasteful"Sunk cost fallacy. Keeping unverified code is technical debt.
"Keep as reference, write tests first"You'll adapt it. That's testing after. Delete means delete.
"Need to explore first"Fine. Throw away exploration, start with TDD.
"Test hard = design unclear"Listen to test. Hard to test = hard to use.
"TDD will slow me down"TDD faster than debugging. Pragmatic = test-first.
"Manual test faster"Manual doesn't prove edge cases. You'll re-test every change.
"Existing code has no tests"You're improving it. Add tests for existing code.

Red Flags - STOP and Start Over

  • Code before test
  • Test after implementation
  • Test passes immediately
  • Can't explain why test failed
  • Tests added "later"
  • Rationalizing "just this once"
  • "I already manually tested it"
  • "Tests after achieve the same purpose"
  • "It's about spirit not ritual"
  • "Keep as reference" or "adapt existing code"
  • "Already spent X hours, deleting is wasteful"
  • "TDD is dogmatic, I'm being pragmatic"
  • "This is different because..."

All of these mean: Delete code. Start over with TDD.

Example: Bug Fix

Bug: Empty email accepted

RED

Verify RED

GREEN

Verify GREEN

REFACTOR Extract validation for multiple fields if needed.

Verification Checklist

Before marking work complete:

  • Every new function/method has a test
  • Watched each test fail before implementing
  • Each test failed for expected reason (feature missing, not typo)
  • Wrote minimal code to pass each test
  • All tests pass
  • Output pristine (no errors, warnings)
  • Tests use real code (mocks only if unavoidable)
  • Edge cases and errors covered

Can't check all boxes? You skipped TDD. Start over.

When Stuck

ProblemSolution
Don't know how to testWrite wished-for API. Write assertion first. Ask your human partner.
Test too complicatedDesign too complicated. Simplify interface.
Must mock everythingCode too coupled. Use dependency injection.
Test setup hugeExtract helpers. Still complex? Simplify design.

Debugging Integration

Bug found? Write failing test reproducing it. Follow TDD cycle. Test proves fix and prevents regression.

Never fix bugs without a test.

Testing Anti-Patterns

When adding mocks or test utilities, read @testing-anti-patterns.md to avoid common pitfalls:

  • Testing mock behavior instead of real behavior
  • Adding test-only methods to production classes
  • Mocking without understanding dependencies

Final Rule

No exceptions without your human partner's permission.

3mo ago·17m

The CI suite is still running in the background (it pipes through tail, so output lands only at completion). Note on rigor: the trivial Fprintln cleanup landed after test:ci started, but it emits an identical string and the affected package re-ran green just now — I'll confirm the full result when the suite finishes and then commit.

Status so far:

  • Diagnosis helper (strategy.DiagnoseCommittedMetadataMirror + MirrorStatus/MirrorDiagnosis) — TDD'd, 7 table cases green, read-only invariant asserted.
  • Doctor check (checkCommittedMetadataMirror) — TDD'd, all 7 state tests + the runSessionsFix wiring test green; long help updated; runs right after the disconnected-metadata check; --force auto-fixes missing/stale/diverged, warn-only for "v1 branch missing".
  • Bundle capture — entire-refs.txt with for-each-ref output + mirror status: line, TDD'd green; settings scoped via settings.WithWorktreeRoot so it works when bundling from outside the repo CWD.
  • Docs — sessions-and-checkpoints.md v1.1 section now names doctor as the repair path.
  • mise run fmt + mise run lint: clean (0 issues).

Waiting on test:ci to finish before committing.

3mo ago·1m

Done — committed as 9658c4c0c on doctor-v11-mirror-check, stacked on the #1335 branch.

What shipped

strategy.DiagnoseCommittedMetadataMirror (strategy/v1_custom_ref_mirror.go) — read-only classifier of the mirror vs the local v1 tip: NotConfigured | OK | Missing | Behind | Diverged | PrimaryMissing, returning the resolved refs so the caller can repair with the existing MirrorCommittedMetadataRef. Plus a String() used by the bundle.

entire doctor — new check #2, right after the disconnected-metadata check (so a reconciled v1 gets re-checked for residual drift):

  • silent in v1 mode; ✓ Checkpoint read mirror: OK when healthy (including "no committed metadata yet")
  • MISSING / STALE / DIVERGED → explain, confirm (auto with --force), point mirror at v1 tip; diverged explicitly says the discarded commits aren't on v1
  • mirror-outlives-v1 anomaly → warn-only with the git fetch origin entire/checkpoints/v1:... suggestion
  • errors accumulate like the existing checks without aborting the rest of doctor

entire doctor bundle — new entire-refs.txt: for-each-ref over refs/heads/entire, refs/entire, refs/remotes/origin/entire + a mirror status: STALE (mirror abc1234, v1 def5678) line, best-effort and redaction-safe.

Docs — sessions-and-checkpoints.md v1.1 section now names doctor as the repair path; design spec at docs/superpowers/specs/2026-06-03-doctor-v11-mirror-check-design.md (local-only — docs/superpowers/ is gitignored here).

Verification

  • TDD throughout — every test watched failing first (undefined symbols / missing zip entry), then green
  • 16 new tests: 7 diagnosis states, 8 doctor-check (incl. runSessionsFix wiring), 1 bundle
  • mise run fmt + mise run lint: 0 issues, re-run after the last edit
  • mise run test:ci: full pass, canary 🎉

Want me to push the branch and open the stacked PR (base: fix/checkpoints-v1.1-advance-after-sync), or hold until #1335 merges?

/simplify → 4 cleanup agents in parallel → apply the fixes

You are improving the quality of the changed code, not hunting for bugs. Review it for reuse, simplification, efficiency, and altitude issues, then fix what you find. Do not look for correctness bugs — that is what /code-review is for.

Phase 0 — Gather the diff

Run git diff @{upstream}...HEAD (or git diff main...HEAD / git diff HEAD~1 if there's no upstream) to get the unified diff under review. If there are uncommitted changes, or the range diff is empty, also run git diff HEAD and include the working-tree changes in scope — the review often runs before the commit. If a PR number, branch name, or file path was passed as an argument, review that target instead. Treat this diff as the review scope.

Phase 1 — Review (4 cleanup agents in parallel)

Launch 4 independent review agents via the Agent tool, all in a single message so they run concurrently. Pass each agent the diff and one of the four angles below. Each returns its findings with file, line, a one-line summary, and the concrete cost (what is duplicated, wasted, or harder to maintain).

Reuse

Flag new code that re-implements something the codebase already has — Grep shared/utility modules and files adjacent to the change, and name the existing helper to call instead.

Simplification

Flag unnecessary complexity the diff adds: redundant or derivable state, copy-paste with slight variation, deep nesting, dead code left behind. Name the simpler form that does the same job.

Efficiency

Flag wasted work the diff introduces: redundant computation or repeated I/O, independent operations run sequentially, blocking work added to startup or hot paths. Name the cheaper alternative.

Altitude

Check that each change is implemented at the right depth, not as a fragile bandaid. Special cases layered on shared infrastructure are a sign the fix isn't deep enough — prefer generalizing the underlying mechanism over adding special cases.

Phase 2 — Apply the fixes

Wait for all four agents to complete, dedup findings that point at the same line or mechanism, and fix each remaining one directly. Skip any finding whose fix would change intended behavior, require changes well outside the reviewed diff, or that you judge to be a false positive — note the skip rather than arguing with it. Finish with a brief summary of what was fixed and what was skipped (or confirm the code was already clean).

3mo ago·14m

While that runs, here's the simplify summary:

Fixed

  1. Split the overloaded MirrorPrimaryMissing (simplification) — new MirrorNoMetadata status for the healthy fresh-repo case. Previously every consumer had to re-derive the Mirror.IsZero() split, and the bundle mislabeled a brand-new v1.1 repo as V1 MISSING. Now the diagnosis is self-describing and the bundle is correct for free.
  2. Status labels now have one source (altitude + simplification, deduped) — doctor headlines print diag.Status (the String() the bundle already used) instead of re-spelling "MISSING"/"STALE"/"v1 BRANCH MISSING" as inline copy. The two surfaces can no longer drift; String() now says V1 BRANCH MISSING to match.
  3. Topology from diag.Refs.Primary, not hardcoded entire/checkpoints/v1 (altitude) — all messages, the pasteable git fetch suggestion, and the "✓ Fixed" line render diag.Refs.Primary.Short(), so a future topology flip (v1.1 as primary) keeps doctor's guidance correct instead of pointing users at the wrong ref.
  4. Extracted confirmDoctorFix (simplification) — the ~18-line confirm block I'd copy-pasted from checkDisconnectedMetadata is now one shared helper used by both checks (abort handling, accessibility wrapping, -> Skipped in one place).
  5. Bundle glob comment (altitude, partial) — documented that the for-each-ref namespaces are deliberately broader than the resolved topology (they also capture shadow/trails branches); deriving them from CommittedRefs would narrow the capture, so globs stay.

Skipped

  • Reuse strategy.IsAncestorOf — deliberate semantic difference, not duplication: it's a depth-capped (1000) error-swallowing log walk; a v1 branch grows one commit per condensation, so a merely-stale mirror past the cap would misclassify as DIVERGED with misleading "something moved your ref" copy. The diagnosis needs exact ancestry + surfaced errors.
  • String() default arm — Go requires the function be total; the default is the idiomatic way. Not dead-code noise worth restructuring.
  • Cross-package test-helper consolidation into testutil — the duplicated helpers are 5-line fixtures in two packages that can't share _test.go code; a testutil ref-manipulation API is a broader refactor than this diff warrants.
  • Repo-wide short-hash primitive — hash.String()[:7] recurs at ~20 pre-existing sites; consolidating is out of scope. shortMirrorHash stays local.
  • Third openRepository in the doctor flow — efficiency agent itself concluded it follows the existing per-check pattern in a one-shot interactive command; not worth restructuring all three checks.
  • Pre-existing dup-linter hits (TestClassifySession_*, doctor_logs_test.go) — advisory-level and not introduced by this change.

All affected tests re-ran green after the refactor; mise run fmt + mise run lint: 0 issues. Waiting on test:ci to confirm the full gate, then I'll amend/commit the cleanup.

3mo ago·55.1s

Cleanup committed as ed38787bc (net −56/+70 across 5 files, mostly the dedup and label unification).

The branch now has:

  • 9658c4c0c — doctor mirror check+repair (TDD'd feature)
  • ed38787bc — simplify-pass fixes (status split, single label source, topology-aware messages, shared confirm helper)

Both verified with the full mise run check gate (fmt, lint 0 issues, test:ci exit 0 including the Vogon canary).

Still pending your call from earlier: push doctor-v11-mirror-check and open the stacked PR against fix/checkpoints-v1.1-advance-after-sync, or hold until #1335 merges?

Simplify and deduplicate the tests and reduce the verbosity of the comments throughout

3mo ago·6m

The cleanup nets −150/+126. Summary of what changed:

Tests deduplicated:

  • The seven TestCheckCommittedMetadataMirror_* functions (~113 lines of repeated setup/run/assert) are now one table-driven TestCheckCommittedMetadataMirror with 7 cases — same coverage, one assertion loop, and the convention that each case's setup returns the expected final mirror state. The stale case got tighter too (setMetadataV1Branch reused instead of a manual NotEqual dance).
  • TestRunSessionsFix_IncludesMirrorCheck stays separate (different entry point).

Comments trimmed (meaning preserved, prose cut):

  • DiagnoseCommittedMetadataMirror: 5 lines → 2 (dropped the remote-tracking digression)
  • String(), MirrorDiagnosis: 2 lines → 1 each
  • checkCommittedMetadataMirror: 4 → 3; check-2 wiring comment: 2 → 2 but tighter; confirmDoctorFix: 3 → 2
  • entireRefsReport: 4 → 2; glob rationale: 4 → 2; settings-scope note: 2 → 1
  • Test doc comments: multi-line explanations collapsed to one-liners where the test name already says it

All consolidated tests pass (7 subtests + wiring + bundle), lint is at 0 issues, and test:ci is running in the background — I'll commit once it confirms.

3mo ago·35.5s

Committed as 248c52246. Full gate confirmed: integration suite (59 tests) and Vogon canary (4 tests) all passed, lint at 0 issues.

The stacked branch now reads:

CommitWhat
9658c4c0cdoctor mirror check+repair (feature, TDD'd)
ed38787bcreview fixes — status split, single label source, topology-aware messages, shared confirm helper
248c52246test dedup (7 funcs → 1 table) + comment trims, net −24 lines

Branch total vs #1335: the feature plus its tests and docs, with the test surface now in the same table-driven style as the strategy package's existing mirror tests.

Ready to push and open the stacked PR whenever you give the word.